Basic Information
VIS ID
TVIS10001775
Fusion event
HBV-LOC101929710 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
95720247/96384543 (Hg38)
End
95720247/96384543 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5B
Target gene
LOC101929710
Nearest miRNA
hsa-mir-10397/Upstream/305331; hsa-mir-103a-1/Downstream/4431939;
Nearest TSS
ENST00000502646/Upstream/136767; ENST00000509602/Downstream/28442;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/422429, chr5-CpG: 18/Downstream/48627
Nearby gene
MIR583(-305331) ; PCSK1(+5793) ;
Upstream sequence
tctgcaagtggataattgcaccgcttgtaggacttcgttgcaaacgggaatatcttcatataaaaagtagacagaagcattctcagaaaattgtttgcca
Downstream sequence
TCACTGACCACAGTTGGCACCTCTTTTCCGTCAGCTGACTGGCACTGCAGCATTTTCCACTGGGGCAAGGAGAAGGCATGAGCTGTAAGCTCTCAGAAAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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