CLYBL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001776
Fusion event
HBV-CLYBL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
100346671/99694417 (Hg38)
End
100346671/99694417 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA13D
Target gene
CLYBL
miRNAs that regulate target gene
hsa-mir-769-5p
Nearest miRNA
hsa-mir-1297/Upstream/51268; hsa-mir-1267/Downstream/2273225;
Nearest TSS
ENST00000623511/Upstream/3446; ENST00000416504/Downstream/33074;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/36225, chr13-CpG: 18/Downstream/200501
Upstream sequence
AGTGCACACACATTTGCTGTGCACATGTATGTGTTACAGCTGCAACCAAAGCGTGCGTTTTCCTTCCCCAAGTCTGTGTTGGGGACTTCCGCAGACACAG
Downstream sequence
CAGATGGCCAGAGTGTTTCCACGTTTCAGCCTCGAAGTGAGAGGGCAGCATGTCATTCACCAGCCTGGCACTTACCCATCCATCAGGGCCACCTCTATAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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