Basic Information
VIS ID
TVIS10001781
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
106012264/106371818 (Hg38)
End
106012264/106371818 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA7F
Nearest miRNA
hsa-mir-10525/Upstream/3900287; hsa-mir-10399/Downstream/8281527;
Nearest TSS
ENST00000635602/Upstream/85492; ENST00000470135/Downstream/227090;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/86609, chr7-CpG: 121/Downstream/288138
Nearby gene
NAMPT(-86626) ; CCDC71L(+284947) ;
Upstream sequence
ctttttgtcgaatctgcaagtggacatttggagcactttgaaggctatggtggaaaaggaaatatcttcacataaaaactagatggaagcattctcagaa
Downstream sequence
gatccaggcagcaaccatgcaagccatggcatccggtgaacagaggcagtggcacagtgtcctccctggactgattctgtggtatggctttggctttgtt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate