Basic Information
VIS ID
TVIS10001786
Fusion event
HBV-LOC105378909 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
112797289/112254667 (Hg38)
End
112797289/112254667 (Hg38)
Location type
Intronic
Target gene
LOC105378909
Nearest miRNA
hsa-mir-101-1/Upstream/2655700; hsa-mir-11399/Downstream/207103;
Nearest TSS
ENST00000473358/Upstream/264131; ENST00000502356/Downstream/105861;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/263516, chr1-CpG: 25/Downstream/141206
Nearby gene
LINC01750(-255826) ; CTTNBP2NL(+141511) ;
Upstream sequence
ATAAAATATAGAGGAGGAAGGGAGAAAGGATCTTGTTTCCTATATCTAAAAATGCACCCACAAGATCAAGCTTAAAAACCTGTGTGAGCTGTTCAAAACA
Downstream sequence
GACAAAAACTCTGCTTAGCTGTGATGGGCTGGGCTGGACTAAGAAGACACATTTCTAAAACATCAAAAGGAATGTACCAGTAACAGCTCACAGCCCTCAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate