DNM3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001815
Fusion event
HBV-DNM3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
172331722/172362582 (Hg38)
End
172331722/172362582 (Hg38)
Location type
Intronic
Target gene
DNM3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/217938; hsa-mir-1182/Downstream/3605788;
Nearest TSS
ENST00000473358/Upstream/217788; ENST00000491124/Downstream/16436;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/520397, chr1-CpG: 35/Downstream/81145
Upstream sequence
AAGGTGAATTTTTCGAGTATTTCTCCTGTACAGCATACTGAATCTCATTTGTTTGTTGTTATTTCTAGTGTCTTTAGTCTTTTGCCTTCTGGCTTCTTTT
Downstream sequence
TAAACTTCATATATACACATGTCTTCCCTGGCCTAAAAGAAACATCTTTGACCCAACCCTGGTATCTTGATAAACACCGTGCCATTCCCTTCATTTTTCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate