PTH2R _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001821
Fusion event
HBV-PTH2R integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q34
Reference genome
GRCh37/hg19
Start
209271738/208407013 (Hg38)
End
209271738/208407013 (Hg38)
Location type
UTR5
Fragile sites / regions
FRA2I
Target gene
PTH2R
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-10b/Upstream/652132; hsa-mir-1244-1/Downstream/4019250;
Nearest TSS
ENST00000437798/Upstream/182; ENST00000419079/Downstream/82073;
Nearest CpG islands
chr2-CpG: 70/Target, None/Upstream, None/Downstream
Upstream sequence
GGGCCCGACCACCCCAGCTGCGCGTCGTTACTGGCCACAAGTTTGCTCTGGGCCAGCCAAGTTGGCAACTTGGAAGCTTCTCCCGGGCTCTGGAGGAGGG
Downstream sequence
TCCCTGCTTCTTCCTACAGCCGTTCCGGGCATGGCCGGGCTGGGGGCGTCGCTCCACGTCTGGGGTTGGCTAATGCTCGGCAGCTGCCTCCTGGCCAGAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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