Basic Information
VIS ID
TVIS10001822
Fusion event
HBV-LOC105372912 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
213596912/213423569 (Hg38)
End
213596912/213423569 (Hg38)
Location type
Intronic
Target gene
LOC105372912
Nearest miRNA
hsa-mir-101-1/Upstream/1345884; hsa-mir-1182/Downstream/6694284;
Nearest TSS
ENST00000473358/Upstream/181509; ENST00000417161/Downstream/68732;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/33954, chr1-CpG: 42/Downstream/556302
Nearby gene
RPS6KC1(-150104) ; LINC00538(+501180) ;
Upstream sequence
TCATCGCCCAGATTTAGCCACCAGTTTGACAAGGAGAGTACCCAGGAGGGTGGCTTTGGGGGGTGAGGATGTCGACTGCAAATAGCTCAGCCAAGGCTCA
Downstream sequence
CTGCTGAAAACTTTATTTAAAAACTGCAGCATCACGCCGACCTTCTCTCTCTAGGTAGCTGAGAAGCCAGCAAGAGGAAAGGACTTCTTTCCTATGTCAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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