CENPF _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001823
Fusion event
HBV-CENPF integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
214778733/214605390 (Hg38)
End
214778733/214605390 (Hg38)
Location type
Intronic
Target gene
CENPF
miRNAs that regulate target gene
hsa-mir-373-3p ; hsa-mir-375 ; hsa-mir-122-5p ; hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-16-5p ; hsa-mir-1226-3p ; hsa-mir-877-5p ; hsa-mir-93-3p ; hsa-mir-148a-5p ; hsa-mir-205-5p
Nearest miRNA
hsa-mir-101-1/Upstream/2527705; hsa-mir-1182/Downstream/5512463;
Nearest TSS
ENST00000473358/Upstream/1906; ENST00000614578/Downstream/42577;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1798, chr1-CpG: 78/Downstream/175
Upstream sequence
TACCAGGAAAGCTTACTGTTTCTAAGGccttaggaagtcaccatcattattatcctcattttacaaacaagggaaacaaggcatagagcagctaaataac
Downstream sequence
ttgcccaaggtcatacatccgtaagtgcctgagctagaagaatccGCTTTGtttttttttttttttaaattttaaatctttaatttCTGTTTTCACGTAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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