WDR64 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001827
Fusion event
HBV-WDR64 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
241870621/241707319 (Hg38)
End
241870621/241707319 (Hg38)
Location type
Intronic
Target gene
WDR64
Nearest miRNA
hsa-mir-101-1/Upstream/574973; hsa-mir-3124/Downstream/1638857;
Nearest TSS
ENST00000473358/Upstream/23739; ENST00000478331/Downstream/34229;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/66729, chr1-CpG: 57/Downstream/140530
Upstream sequence
gcgtacagctggcactcataaatgttgttgactcactgaCTGAGGACCCACTGAGTAAGCCCTAAAAACTCTACTTCCTTCATAGGCTTTGCTGCCCCTG
Downstream sequence
GCAACTTTCCTACCTTGAGTATTTCCCTTTTGGAGTACACTTAGAGTCAACTGTCCTCTCTCCTTAACTCCCTTATGAGCCCTAGACATTCTTTGATATG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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