Basic Information
VIS ID
TVIS10001849
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
39434992/39413442 (Hg38)
End
39434992/39413442 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1343/Upstream/3403238; hsa-let-7a-2/Downstream/4146214;
Nearest TSS
ENST00000527297/Upstream/764584; ENST00000524493/Downstream/828441;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2902975, chr11-CpG: 49/Downstream/3898447
Nearby gene
LRRC4C(+700759) ;
Upstream sequence
gctctgaaacctctgcctcctgggttcattctcctgcctcagtctccctagtagctgggactataggcatgtgccaccatgcctggctaattttttgtat
Downstream sequence
ttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgccctggtctcccagagtgctgggattacag
Target sequence
tcatgagagggatctactgggcttggttgggcacagtgttctcacttacatgtctggacttttttttctgggcacttctgttcttcacatagcttctccagcctacgtcaagagagtaagtcacatcatgtaagaatctatcaagcctctccttgcatcaaatttgctaatatccaactggccaaagtaagtcggatggccaaaaaaaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate