hsa-mir-6826-3p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001871
Fusion event
HBV-C5orf64 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
60956465/61660638 (Hg38)
End
60956465/61660638 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
C5orf64
miRNAs that regulate target gene
hsa-mir-4666b ; hsa-mir-6826-3p ; hsa-mir-505-3p ; hsa-mir-7978 ; hsa-mir-4456 ; hsa-mir-548q ; hsa-mir-4299 ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-6729-3p ; hsa-mir-384 ; hsa-mir-3124-3p ; hsa-mir-587
Nearest miRNA
hsa-mir-10397/Upstream/1956935; hsa-mir-103a-1/Downstream/10508829;
Nearest TSS
ENST00000502646/Upstream/328365; ENST00000511474/Downstream/27261;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/33993, chr5-CpG: 141/Downstream/645152
Upstream sequence
CTGGTACCACAGAGTAGGGGTGTTAACAAGGATGGCACACCCTGCTGTGGTTGGGGACGGGAGAACTGGTCTCAGCCATGGACCCACTGGGCCTGCCCGG
Downstream sequence
aTGCCCTCCATGGCCAGAGAGGAAGGTAGGTCAAACACATATCCTTGGCTCTTCCAGCACCTCTCGTTGTGCTTACCCTGGAGGCCCTGCTCAAATCCAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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