Basic Information
VIS ID
TVIS10001879
Fusion event
HBV-LINC00511 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
70608319/72612180 (Hg38)
End
70608319/72612180 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00511
Nearest miRNA
hsa-mir-10226/Upstream/3512524; hsa-mir-1250/Downstream/2136433;
Nearest TSS
ENST00000595228/Upstream/8672; ENST00000584975/Downstream/28292;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/19239, chr17-CpG: 48/Downstream/28197
Upstream sequence
gtaatcccagcactttgggaggctgaggcgggtggatcatgaggtcgggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaat
Downstream sequence
aaaaaaaaaaaaattagctgggcatggtagcgggtccctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcggagct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate