VISDB Viral Integration Site DataBase

VIS ID

TVIS10001880

Fusion event

HBV-INTS4 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr11

Cytoband

q14.1

Reference genome

Start

End

77675455/77964409 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-455-3p ; hsa-mir-197-3p

Nearest miRNA

hsa-mir-10392/Upstream/2629223; hsa-let-7a-2/Downstream/1437613;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/143193, chr11-CpG: 36/Downstream/30145

Nearest cancer related gene

INTS4(OG, No orient, 0)

Upstream sequence

gtaatcctagcactttaggaggccaaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaaa

Downstream sequence

aaaatacaaaaaaaattagccgggcatggtcgcgggcacctgtagtcccagctactcgggaggctgaggcaggagaacggcgtgaacccaggaggcggag

Target sequence

TCCTCTGCCCTAAACGTCTATCTTTGATGCATTTCTCCTCTTACAGATGTAGATTTGTCATGTTCCGCATCATTCATCTGACTGAAAACCAATATGCCAACTACAGCCCATACTGTGTACTACAGCAAAAGCACACTGCTCTTATCCATTGGAATATGGCTCCACAATCAAAAGTTTAATTTTTGCTCctttccaacatacactgacagggaaaggtacttttattatattcattttatagatgagaaaactggc