SIM1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001885
Fusion event
HBV-SIM1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q16.3
Reference genome
GRCh37/hg19
Start
100905953/100458077 (Hg38)
End
100905953/100458077 (Hg38)
Location type
Intronic
Target gene
SIM1
miRNAs that regulate target gene
hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-3152-3p ; hsa-mir-6867-5p ; hsa-mir-511-3p
Nearest miRNA
hsa-mir-10398/Upstream/1333381; hsa-mir-1202/Downstream/6326048;
Nearest TSS
ENST00000381078/Upstream/30959; ENST00000565695/Downstream/5600;
Nearest CpG islands
chr6-CpG: 63/Target, None/Upstream, None/Downstream
Upstream sequence
cacttaacaacttaaatcatactgtataactaatgtattaagatgacttaccctagaaaatgaaatccaaaagggcagggaatttttttcttgtttataa
Downstream sequence
GCGGAGCTCCAGCCCTCGAGTTTGGGCTTCCCGTAGGGATAGAGCCTGCGGGCCAACCTGGCTGCCCGAGTTGGAGCCAGCCGCGAAAAGACGGCAGAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate