Basic Information
VIS ID
TVIS10001887
Fusion event
HBV-chr6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q16.3
Reference genome
GRCh37/hg19
Start
105330800/104882925 (Hg38)
End
105330800/104882925 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/5758229; hsa-mir-1202/Downstream/1901200;
Nearest TSS
ENST00000381078/Upstream/23006; ENST00000635857/Downstream/53691;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/22884, chr6-CpG: 181/Downstream/57390
Nearby gene
HACE1(-23006) ; LIN28B-AS1(+53369) ;
Nearest cancer related gene
HACE1(TSG, -23006) ;
Upstream sequence
catggcttgctgcagccctgaactcctgggctcaagagatcctcccaccgtagcctcccaagtagctgggactacaggtgtgtgccaccatgcttggcta
Downstream sequence
tttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacccacctcggcctcccaaaatgctgggattaca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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