LRP2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001910
Fusion event
HBV-LRP2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
170217908/169361398 (Hg38)
End
170217908/169361398 (Hg38)
Location type
Intronic
Target gene
LRP2
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-mir-146a-5p
Nearest miRNA
hsa-mir-128-1/Upstream/778380; hsa-mir-10b/Downstream/5806235;
Nearest TSS
ENST00000437798/Upstream/86045; ENST00000469980/Downstream/1136;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/470903, chr2-CpG: 119/Downstream/406
Upstream sequence
CGGCCGGGtctctgtctctctgtctctctctgtctctctctgtctctctctgtctctctctctctctctctctctctccctctctctctctctctctgtc
Downstream sequence
tctctcctctctctcctctctctctctcttctcCCGCCCCAGTCGttctcttccctccttctttccttattcctatttgcttctcttacgctctctcctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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