VISDB Viral Integration Site DataBase

VIS ID

TVIS10001911

Fusion event

HBV-BBS5 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr2

Cytoband

q31.1

Reference genome

Start

End

170334468/169477958 (Hg38)

Location type

Promoter

Target gene

miRNAs that regulate target gene

hsa-mir-4713-5p ; hsa-mir-934 ; hsa-mir-3618 ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-138-1-3p ; hsa-mir-589-3p ; hsa-mir-4698 ; hsa-mir-3184-3p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-2355-5p ; hsa-mir-627-3p ; hsa-mir-6734-3p ; hsa-mir-4286 ; hsa-mir-1224-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-593-5p ; hsa-mir-661 ; hsa-mir-767-5p ; hsa-mir-3663-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-6777-3p ; hsa-mir-1306-5p ; hsa-mir-7703 ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-1207-5p ; hsa-mir-1321 ; hsa-mir-1827 ; hsa-mir-3929 ; hsa-mir-4269 ; hsa-mir-4270 ; hsa-mir-4419b ; hsa-mir-4441 ; hsa-mir-4478 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4739 ; hsa-mir-4742-5p ; hsa-mir-4756-5p ; hsa-mir-4763-3p ; hsa-mir-4768-3p ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6715b-5p ; hsa-mir-6754-5p ; hsa-mir-7160-5p

Nearest miRNA

hsa-mir-128-1/Upstream/894940; hsa-mir-10b/Downstream/5689675;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/113354, chr2-CpG: 66/Downstream/1413

Upstream sequence

ctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcaggctcccgagtagctgggattacaggcgtccaccaccgtgcccagctaatttg

Downstream sequence

gggtttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctggga