HTR3D _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001912
Fusion event
HBV-HTR3D integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q27.1
Reference genome
GRCh37/hg19
Start
183746950/184029162 (Hg38)
End
183746950/184029162 (Hg38)
Location type
Promoter
Fragile sites / regions
FRA3C
Target gene
HTR3D
Nearest miRNA
hsa-let-7g/Upstream/142277; hsa-mir-1224/Downstream/212243;
Nearest TSS
ENST00000440867/Upstream/11147; ENST00000428798/Downstream/2382;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/10847, chr3-CpG: 55/Downstream/105828
Upstream sequence
ccactcccagattcctgaccctcggaaactatgggagataatatgtatttgttgttttacagtgtggagtaatctgttacacagcaataggtaactaata
Downstream sequence
actaaaaattagccatgcgtggtggtgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate