Basic Information
VIS ID
TVIS10001940
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p11
Reference genome
GRCh37/hg19
Start
46367071/46366969 (Hg38)
End
46367071/46366969 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/7809408; hsa-mir-103a-1/Downstream/7584535;
Nearest TSS
ENST00000502646/Upstream/476753; ENST00000513414/Downstream/4045029;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/670561, chr5-CpG: 79/Downstream/4073804
Nearby gene
HCN1(-670851) ;
Upstream sequence
ggacccagacttcaggccaaactaccaaggagctaggaagtacacagtcacatgagtactccagaagcacatcaacccagaatctctgaaagctattgat
Downstream sequence
tgtttgcattcaactcacagtgctgaaccttccttttgaaagagcagttttgaaatactctttttgtagaatgtgcaagtggatatttggaccgctataa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate