Basic Information
VIS ID
TVIS10001943
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q11
Reference genome
GRCh37/hg19
Start
51567277/54552001 (Hg38)
End
51567277/54552001 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/6455143; hsa-let-7a-2/Downstream/2191872;
Nearest TSS
ENST00000527297/Upstream/4253383; ENST00000319760/Downstream/51997;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4253400, chr11-CpG: 94/Downstream/1320591
Nearby gene
OR4C46(-51066) ;
Upstream sequence
cctggtttagtcttcggagagtgtatgtgtcaaggaatttatccatttcttctagatttttctagaaaattttctgagaatgcttctgtctaggtttgat
Downstream sequence
gtgaagatatacccgcttcgaacgaaggacacaaagtggtccaaatatccacttgcagattctactaaaagagtgtttcaaacctgaactatcaaaggaa
Target sequence
TTGGTTGAAAGCACTTTGAAAAGCTGTTGCCCCACACCTGTCTGGTCGACCAATAGGAATGCTCCGTCCAGAATGGTGGCTACAATGCCCAATAGGAGAGATTCATACTGAATGACATCAAACTGGCCCAATAGGAAGGGTTTATATTGAATGGTATCAAATCAGTCCAATAGGAGTGCTGCCTATGAAACCGGGAAAGGCAATCCAATCCAGTTCTCCCTTTTAGAATTTGATTACTGAggccagatgcggtgg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate