Basic Information
VIS ID
TVIS10001946
Fusion event
HBV-chr3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
90354707/90305557 (Hg38)
End
90354707/90305557 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/3079280; hsa-mir-12124/Downstream/6054407;
Nearest TSS
ENST00000440867/Upstream/1197881; ENST00000478400/Downstream/3605600;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1190600, chr3-CpG: 39/Downstream/3668153
Nearby gene
EPHA3(-823423) ;
Nearest cancer related gene
EPHA3(TSG, -823423) ;
Upstream sequence
aggccgaggcgggcagatcacgaggtcaggagactgagaccatcctggctaacacggtgaaaccctgtctttactaaaatacaaaaaaagtagcccgacg
Downstream sequence
aaagaagtttctcaggatgcttctgtgtagtttttatgtgaagatatttccttttccaccataggtctcaaagcgctccaaatatcaacttgcagaatct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate