CLVS1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001984
Fusion event
HBV-CLVS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62361661/61449102 (Hg38)
End
62361661/61449102 (Hg38)
Location type
Intronic
Target gene
CLVS1
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-124-1/Upstream/18552827; hsa-mir-10400/Downstream/265686;
Nearest TSS
ENST00000518652/Upstream/58096; ENST00000522928/Downstream/5040;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/309230, chr8-CpG: 102/Downstream/264895
Upstream sequence
ctaagaaaacactgccaaatgtagttacaaagacttatgccaatgttttcttctgaaagttttagagttttagctgttacagttagctgttttattttga
Downstream sequence
aggtagaagtccatgttcctcactcagcctctgttgacacccaagtagggagggcctcctcattactggtgggcaggagtgggagttctggctccccaca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate