Basic Information
VIS ID
TVIS10001985
Fusion event
HBV-LOC100130345 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
63760613/63774937 (Hg38)
End
63760613/63774937 (Hg38)
Location type
Intronic
Target gene
LOC100130345
Nearest miRNA
hsa-let-7g/Upstream/3157067; hsa-mir-12124/Downstream/3450527;
Nearest TSS
ENST00000440867/Upstream/122239; ENST00000647022/Downstream/44425;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/496408, chr3-CpG: 152/Downstream/88433
Nearby gene
SNTN(-109722) ; C3orf49(+44428) ;
Upstream sequence
tgcagtcttactctgtcgcccagagctgtagtgcaatggtgtgatctcggctccctgcaacctccgcctcccaggttaaagcaattctcctgcctctgct
Downstream sequence
GATTGTATCAGGAGGCTCATCAAGGTCCCGACACAAGAGTTTTGCAACTACTGTATCTTTCGCAATTTCCTCCTTGAGTGTGTGCCTGTTTAATTTTTTA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate