Basic Information
VIS ID
TVIS10001987
Fusion event
HBV-LOC101927284 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
95530167/94877913 (Hg38)
End
95530167/94877913 (Hg38)
Location type
Intronic
Target gene
LOC101927284
Nearest miRNA
hsa-mir-1297/Upstream/2387693; hsa-mir-1267/Downstream/1549316;
Nearest TSS
ENST00000623511/Upstream/165197; ENST00000563184/Downstream/82128;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/164116, chr13-CpG: 93/Downstream/89716
Nearby gene
SOX21-AS1(-161968) ; ABCC4(+141916) ;
Upstream sequence
Gggccgggtgtggtggcttacacctgtaatcccagcactttgggaggccgaggtaggtgggtcacgaggtcaggagttcaaaaccagcctggtcaacatg
Downstream sequence
gtgaaacctcatctctactaaaaatacaaaaattaactgagcgtggtggtaggcacctgtaatcccatctactccggaggctgaggcaggagaatcattt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate