Basic Information
VIS ID
TVIS10001989
Fusion event
HBV-MIR548AN integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
100065114/99412860 (Hg38)
End
100065114/99412860 (Hg38)
Location type
Promoter
Fragile sites / regions
FRA13D
Target gene
MIR548AN
Nearest miRNA
hsa-mir-1297/Upstream/56632; hsa-mir-1267/Downstream/230199;
Nearest TSS
ENST00000623511/Upstream/45073; ENST00000626308/Downstream/19842;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/211562, chr13-CpG: 20/Downstream/64173
Upstream sequence
GTCTCATCTCTGCAAATAGAGAAGGAGCTTCTATTCAAATGGAAAGGAAGGGAAGCAAGGCTGAAAGGCAGAGAGAGGAGCACCAGAAAGCCCTTTGAAC
Downstream sequence
CTCAggatgggtggatggatggatgcatagatggatgaatagatagaGACAGAGATGCTAGATTAGATAGGCAGGTGGACAGATATGACAGATTACTTAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate