WDR49 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001992
Fusion event
HBV-WDR49 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
167198335/167480547 (Hg38)
End
167198335/167480547 (Hg38)
Location type
Intronic
Target gene
WDR49
Nearest miRNA
hsa-let-7g/Upstream/3308991; hsa-mir-1224/Downstream/1071307;
Nearest TSS
ENST00000440867/Upstream/1543; ENST00000472941/Downstream/50642;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/100137, chr3-CpG: 37/Downstream/254041
Upstream sequence
TAGATTCCAGGAGCTCTTGTATCACTGAGCCCTCCCTCTTCCCTCCTTTTCTTCAGAGTATTGGAATCTGTGGCtttttttttttttttttttttttttt
Downstream sequence
GCTACAaaagtcaagatctttcctcttcttctcatggaaattatatgaaagcaaccaggaaaattacagataataactttgcaaataaattctactttaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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