ADAMTS12 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001995
Fusion event
HBV-ADAMTS12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33728966/33728861 (Hg38)
End
33728966/33728861 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
ADAMTS12
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10397/Upstream/1334386; hsa-mir-103a-1/Downstream/2419031;
Nearest TSS
ENST00000502646/Upstream/104510; ENST00000330120/Downstream/111451;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/226603, chr5-CpG: 25/Downstream/163225
Upstream sequence
ggacgggTGCCCGGGTCCCCAGTCCCTCCGCCACGTGGGAAGCGCGGTCCTGGGCGTCTGTGCCCGCGAATCCACTGGGAGCCCGGCCTGGCCCCGACAG
Downstream sequence
TATTTCATTACAAAGTAGCATGTATCATATGCAtatatgcttatataaatgcacatgcatatgtgtatatgtacatgatatatcatatgcatatatgtgt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate