Basic Information
VIS ID
TVIS10002016
Fusion event
HBV-LOC105375849 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
57331126/56418567 (Hg38)
End
57331126/56418567 (Hg38)
Location type
Intronic
Target gene
LOC105375849
Nearest miRNA
hsa-mir-124-1/Upstream/13522292; hsa-mir-10400/Downstream/5296221;
Nearest TSS
ENST00000518652/Upstream/97791; ENST00000522511/Downstream/19943;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/98331, chr8-CpG: 138/Downstream/27000
Nearby gene
SDR16C6P(-27857) ; PENK(+22387) ;
Upstream sequence
AGGTAGAATTTGAATGTAATTTATGTTTAGTAAATGAAAACAAATCAGTTGCTTTTAAAAAATAATGTGTGTGTATATATATATATATacacacacacac
Downstream sequence
ggagctgaaattgtggcaataatcaatagcttaccaaccaaaaagagtccaagaccagacagattcacagctgaattataccagagttacaaggaggaac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate