Basic Information
VIS ID
TVIS10002025
Fusion event
HBV-LINC02456 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
102704223/102310445 (Hg38)
End
102704223/102310445 (Hg38)
Location type
Intronic
Target gene
LINC02456
Nearest miRNA
hsa-let-7i/Upstream/2120496; hsa-mir-1178/Downstream/1619980;
Nearest TSS
ENST00000382841/Upstream/6090; ENST00000266744/Downstream/105301;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/190274, chr12-CpG: 38/Downstream/513897
Nearby gene
PMCH(-112609) ; IGF1(+85422) ;
Upstream sequence
tcctccttgtacctctagtagaattcagctgtgaatccatctggtcttggactctttttggttggtaagctattgattattgccacaatttcagctcctg
Downstream sequence
ttattggtctattcagagattcaacttcttcctggtttagtcttgggagagtgtatgtgtcgaggaatttatccatttcttctagattttctagtttatt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate