Basic Information
VIS ID
TVIS10002028
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
155038398/155658838 (Hg38)
End
155038398/155658838 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/829298; hsa-mir-103a-1/Downstream/4815564;
Nearest TSS
ENST00000502646/Upstream/645083; ENST00000524347/Downstream/211506;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/720468, chr5-CpG: 125/Downstream/69106
Nearby gene
KIF4B(-640713) ; SGCD(+715369) ;
Upstream sequence
AGGATTACAGGTCGCTCTTCTAGAAATCCCCTTAGTGATCCCTAAGCCTTTTTAAAGGGCTGTGTTTGTGAATTGTCTCTGCCACTAGGGCAAAGGGGCG
Downstream sequence
ggagccgaaattgtggcaataatcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccgaattctaccagaggtacaaggaggaac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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