KDELR2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002033
Fusion event
HBV-KDELR2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
6503858/6464227 (Hg38)
End
6503858/6464227 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7B
Target gene
KDELR2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-324-3p ; hsa-mir-301a-3p ; hsa-mir-100-5p ; hsa-mir-19a-3p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-600 ; hsa-mir-1245b-3p ; hsa-mir-4501 ; hsa-mir-5683 ; hsa-mir-513b-3p
Nearest miRNA
hsa-mir-339/Upstream/752317; hsa-mir-10399/Downstream/602737;
Nearest TSS
ENST00000635602/Upstream/16215; ENST00000489138/Downstream/6179;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/16108, chr7-CpG: 92/Downstream/19206
Upstream sequence
AAATCTTAAGAAAATACATGTTTAACTGAAATTATAAAGATATTTTGCAAAAAAGGGAAATCGCTCCTGCTGGTGTTTTGTGTATAAATCTCTTTCTAAC
Downstream sequence
aaaaaaaaaaaagctaggcgtggtggctcacgcctgtaatcccaatactttgggaggctgaggtgtgcggatcacgaggttgggagttcaagaccagcct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate