Basic Information
VIS ID
TVIS10002052
Fusion event
HBV-VLDLR-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p24.2
Reference genome
End
2590992/2590992 (Hg38)
Location type
ncRNA_intronic
Target gene
Nearest miRNA
hsa-mir-1302-9/Upstream/2560711; hsa-let-7a-1/Downstream/2259305;
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNtaaccctaaccctaaccctaacccaaccccaccccaaccccaaccccaacccaaccctaaccctaaccctaaccca
Downstream sequence
gagctaattacaatcatggtggaagacaaagggggagccagtgtatcataccttgagagggaataaggcaggggcaggtgccaggctcttttaaacaacc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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