Basic Information
VIS ID
TVIS10002054
Fusion event
HBV-LOC102724687 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
67118305/66206070 (Hg38)
End
67118305/66206070 (Hg38)
Location type
Intronic
Target gene
LOC102724687
Nearest miRNA
hsa-mir-124-1/Upstream/1826813; hsa-mir-10400/Downstream/8342473;
Nearest TSS
ENST00000518652/Upstream/13361; ENST00000320270/Downstream/222907;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/28343, chr8-CpG: 112/Downstream/222491
Nearby gene
LINC00967(-8751) ; PRPF31(+213517) ;
Upstream sequence
cccaccatagggtggtttttctctgatctcattattgaacaaatgtacaatcgggttttataccgatacattcagttcccaggggcaggcaggagacagt
Downstream sequence
GGAAGGAGGCAGGATGACCCATTGGCCTCAATCAATTGGACGTTAAAAGAAAGAGGTGCTGTTCCCCAACTCCTCCCAACCCTGACACATGCCTTCACAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate