Basic Information
VIS ID
TVIS10002064
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
59470973/59703500 (Hg38)
End
59470973/59703500 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/108342; hsa-let-7a-2/Downstream/505571;
Nearest TSS
ENST00000527297/Upstream/34520; ENST00000530498/Downstream/9956;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/33741, chr11-CpG: 66/Downstream/51452
Nearby gene
PATL1(-34462) ; OR10V1(+9416) ;
Upstream sequence
tggctcatgcctgtaatcctagcactttgggaggccgaggcaggtgtatcacctgaggtcaggagttcgagaccggcctggctaacatggcaaaaccccg
Downstream sequence
tctctactaaaaatacaaaacaaaacaaaacaaaaaaaaaattagccaggcatggtggcaggcacctgtaataccagctactcaggaggctgaggcagga
Target sequence
tggggatccaagactcctttgagactgacaaaagcttagaggccttctccACCCCTCACCCCCCTCCCCGGAAAACTCATCCCTGAATCGCACAATTTCGTGCGTAGACTCACTCCagtatttaagggaagcacctactatgcgccactcactgttccaagcgctgaggatacaagaattgaacttggcaaagtttctaccccctggagtttacGGGACAATTTTAGATCCTCCTTCGACCCCACCCCCAGCCCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate