Basic Information
VIS ID
TVIS10002068
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37/hg19
Start
133775388/134090635 (Hg38)
End
133775388/134090635 (Hg38)
Location type
Intronic
Target gene
LOC105375513 ; LOC105375514
Nearest miRNA
hsa-mir-10525/Upstream/799647; hsa-mir-10399/Downstream/1116359;
Nearest TSS
ENST00000635602/Upstream/26317; ENST00000473068/Downstream/36664;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1008299, chr7-CpG: 17/Downstream/36617
Nearby gene
EXOC4(-24875) ; LRGUK(+36717) ;
Upstream sequence
gggcggtcacgggggcggggccggtcgcggggcgcggggcgggCCCGAGCTACCGGTAGTCTGCCTGCCGCAGTCCGAGCGCCGCGCTGGGGAGAGCGGG
Downstream sequence
atccccctgttgctctaacattcaggcagccacttgttggtcatgaagggatcttttccagcagtttcatcagctcttaggttttcccttttagggaaga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate