CAMK2D _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002074
Fusion event
HBV-CAMK2D integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
GRCh37/hg19
Start
114441328/113520172 (Hg38)
End
114441328/113520172 (Hg38)
Location type
Intronic
Target gene
CAMK2D
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-484 ; hsa-let-7a-5p ; hsa-mir-30c-5p ; hsa-mir-185-5p
Nearest miRNA
hsa-mir-12113/Upstream/367810; hsa-mir-1305/Downstream/1136587;
Nearest TSS
ENST00000502981/Upstream/2529; ENST00000503557/Downstream/240896;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/813821, chr4-CpG: 86/Downstream/240741
Upstream sequence
ttagggttagggttgggttagggttggggttggggttggggttggggttggggttgggttagggttagggttagggttagggttagggttagggttaggg
Downstream sequence
aaacgggcaaatcacctgaggtcaggtgatcacgaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaaattaaccgggcatgg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate