Basic Information
VIS ID
TVIS10002077
Fusion event
HBV-LOC105371961 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
2352941/2352942 (Hg38)
End
2352941/2352942 (Hg38)
Location type
Intronic
Target gene
LOC105371961
Nearest miRNA
hsa-mir-8078/Upstream/2240603; hsa-mir-1-2/Downstream/1532411;
Nearest TSS
ENST00000575820/Upstream/112095; ENST00000575515/Downstream/136484;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1443369, chr18-CpG: 33/Downstream/218345
Nearby gene
LINC00470(-993311) ; METTL4(+184583) ;
Upstream sequence
caaaaaaaaataaaTTTAAAAGAAGAAAACTGTAGGGAACCCACTCTGGCTGAGGCATATAGCATGGGGAGGGACGGAGTTGAATTGTCAGAGCCATTAG
Downstream sequence
GTCAAACTAGAAATTGTCAGTGAGGTATTGGTGTTTAATCCTGGCAACCACAGGAAATGATTGCCTAGTATTTAAGCAAACTGGTGATGTGAACCATGCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate