FBXO15 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002081
Fusion event
HBV-FBXO15 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
71803011/74135776 (Hg38)
End
71803011/74135776 (Hg38)
Location type
Exonic
Target gene
FBXO15
Nearest miRNA
hsa-mir-1-2/Upstream/1282394;
Nearest TSS
ENST00000575820/Upstream/9675; ENST00000581467/Downstream/90;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1266140, chr18-CpG: 97/Downstream/11544
Upstream sequence
TTAAAAATGGTTAAAAAGTTACTAGTTTTCCTGACTTCCATCAAACTGTCATCAAAACATAACAGAGACTTGGATTTCTGCTTACTTGTCATTGGCTAGA
Downstream sequence
TGATAAAAGCGCCTGCTCACACATCCAGTACACAGAAGGCTCACAGCATCCAAGTAGGAAAATATCTTCAGCAAGATTTCTGAAGGCATTCTGCAAAAAC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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