Basic Information
VIS ID
TVIS10002094
Fusion event
HBV-LOC101929248 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
10709002/10851492 (Hg38)
End
10709002/10851492 (Hg38)
Location type
Intronic
Target gene
LOC101929248
Nearest miRNA
hsa-mir-124-1/Upstream/26049; hsa-mir-10400/Downstream/183714;
Nearest TSS
ENST00000518652/Upstream/10916; ENST00000602443/Downstream/150989;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/11368, chr8-CpG: 29/Downstream/412
Nearby gene
PINX1(-11593) ; XKR6(+44655) ;
Upstream sequence
ATCAAGGTGTAGACCAGGAAATGGTCCCATTCCATCAGATCATAGCAGATCAATGCTGGGTAGCAAGAGCCAGGAAAGAACAGTCTCCTGGCCAGCCTGC
Downstream sequence
GCCCCTGTGGAGTTGTGGTCTCCCCTAAAAGGCGAGGCTATTTGTGGCATCAGTCACGAGGGGAAGAAGAATTAGGGTTCTGGGAGGCAACAGAAAGGGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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