Basic Information
VIS ID
TVIS10002095
Fusion event
HBV-ERLEC1P1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
15457319/14084998 (Hg38)
End
15457319/14084998 (Hg38)
Location type
Intronic
Target gene
ERLEC1P1
Nearest miRNA
hsa-mir-10396a/Upstream/360724; hsa-let-7c/Downstream/2454091;
Nearest TSS
ENST00000624081/Upstream/57547; ENST00000461088/Downstream/104105;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/463, chr21-CpG: 38/Downstream/131120
Nearby gene
ANKRD20A11P(-104554) ; LIPI(+23816) ;
Upstream sequence
cccgccagctgggaccgcagaggaccgcctttccgaggccaaaaaacgctccgcggcgctgccaaatcgttcctcctcggcgggattctgacttagagtc
Downstream sequence
gttcagtcataatcccacatatggtagctttaccccattggctcctcagccaaggacatacaccaaatgtctgaacctggggttcctctcctactgagca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate