Basic Information
VIS ID
TVIS10002115
Fusion event
HBV-GLIDR integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p12
Reference genome
GRCh37/hg19
Start
41952313/39807295 (Hg38)
End
41952313/39807295 (Hg38)
Location type
Intronic
Target gene
GLIDR
Nearest miRNA
hsa-mir-101-2/Upstream/2913764; hsa-let-7a-1/Downstream/1121715;
Nearest TSS
ENST00000422679/Upstream/401990; ENST00000425632/Downstream/2718;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/15121, chr9-CpG: 33/Downstream/2165
Nearby gene
LOC653501(-342769) ; GLIDR(+86) ;
Upstream sequence
ttgagacggagtctcactctgtcgccaggctggagtgcaatggcgccatctagctcactgcaaactctgcctcccaggttaaagcaattctcctgcctcg
Downstream sequence
cctgccttggcctcccaaagtgctgggattacatgcatgagccatcgtgcctggccCGAttttttttttttttttttttttttttAAGAAACTGAAGCCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate