Basic Information
VIS ID
TVIS10002116
Fusion event
HBV-FGF7P3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p12
Reference genome
GRCh37/hg19
Start
42021678/39876660 (Hg38)
End
42021678/39876660 (Hg38)
Location type
Promoter
Target gene
FGF7P3
Nearest miRNA
hsa-mir-101-2/Upstream/2983129; hsa-let-7a-1/Downstream/1052350;
Nearest TSS
ENST00000422679/Upstream/66563; ENST00000425632/Downstream/254261;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/66836, chr9-CpG: 116/Downstream/345408
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaaccctaaccctaaccctaacccaaccccaccccaaccccaaccccaaccc
Downstream sequence
gatcacaaggtcatgagatcgagaccatcctggccaacatagtgaaacccgtctccaataaaaaaaaaaaaaatacaaaaattagctgggcatggtggtg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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