Basic Information
VIS ID
TVIS10002131
Fusion event
HBV-MIR3648-1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr21
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
9825839/8987006 (Hg38)
End
9825839/8987006 (Hg38)
Location type
ncRNA_exonic
Target gene
MIR3648-1
Nearest TSS
ENST00000624081/Upstream/227925; ENST00000624052/Downstream/31664;
Nearest CpG islands
chr21-CpG: 253/Target, None/Upstream, None/Downstream
Upstream sequence
GCGCCCCGCGTGGGGCCCGGTGGGCTTCCCGGAGGGTTCCGGGGGTCGGCCTgcggcgcgtgcgggggaggagacggttccgggggaccggccgcgactg
Downstream sequence
cggcggcggtggtggggggagccgcggggatcgccgagggccggtcggccgccccgggtgccgcgcggtgccgccggcggcggtgAGGCCCCGCGCGTGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate