MNAT1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002137
Fusion event
HBV-MNAT1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
61250828/60784110 (Hg38)
End
61250828/60784110 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA14B
Target gene
MNAT1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-208a/Upstream/135399; hsa-mir-1185-1/Downstream/3310914;
Nearest TSS
ENST00000550708/Upstream/49331; ENST00000556525/Downstream/12210;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/60056, chr14-CpG: 45/Downstream/196835
Nearest cancer related gene
MNAT1(OG, No orient, 0)
Upstream sequence
tatttatttaatttgagatggagtcttgctctgtcgcccaagctggagtgcagtgacacaatctcggctcactgcaacctccgcctccgcctcctgggtt
Downstream sequence
caagccgttctcctgcctcagcctccctagtagctgggattacagatacgtgccaccatgcctggctaattttttttttttttttttttttttagtagag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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