Basic Information
VIS ID
TVIS10002142
Fusion event
HBV-LINC02008 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
82090972/82041821 (Hg38)
End
82090972/82041821 (Hg38)
Location type
Intronic
Target gene
LINC02008
Nearest miRNA
hsa-let-7g/Upstream/2533852; hsa-mir-12124/Downstream/3343889;
Nearest TSS
ENST00000440867/Upstream/55669; ENST00000488348/Downstream/2827754;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/280019, chr3-CpG: 21/Downstream/766012
Nearby gene
GBE1(-280022) ;
Upstream sequence
atatatatacatatatacatatatacatatatacatatatatacatatatacatatatatacatatatacatatatatatacatatatacatatatatac
Downstream sequence
GAACACTGTAAATAGGACATTGAGAACATTGAAAAAatagatagatagatagataggtagatagatagatagatagatGAACACTGTAAATAGGGCATTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate