SNTG2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002159
Fusion event
HBV-SNTG2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
1314853/1311081 (Hg38)
End
1314853/1311081 (Hg38)
Location type
Intronic
Target gene
SNTG2
miRNAs that regulate target gene
hsa-mir-146a-5p
Nearest miRNA
hsa-mir-10b/Downstream/4663581;
Nearest TSS
ENST00000437798/Upstream/48237; ENST00000472606/Downstream/35487;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/28211, chr2-CpG: 95/Downstream/165905
Upstream sequence
AGTGCCTCCTTTTGCTTGACAGCGTGCGTATCCCTCACCCAAAATGACCTGGGCAGTGCTAGAGTAAGCATGCCGGCGGTCCGGGGGCATCTGGGCCAGC
Downstream sequence
TCCAGCCCTCTACCCGCTCTCTCTGCTTCCAGGGAGGAACTTTTCACCTCCTCAGCTGAGGTTCTTCTCTGCTCGCTGTCCTCTCCACTCTAGGTCAACT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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