VISDB Viral Integration Site DataBase

VIS ID

TVIS10002173

Fusion event

HBV-FAT3 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr11

Cytoband

q14.3

Reference genome

Start

End

92081866/92348700 (Hg38)

Location type

Promoter

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-132-3p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-1303 ; hsa-mir-296-3p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-4719 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-32-3p ; hsa-mir-4747-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-6788-5p ; hsa-mir-1273h-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-7977 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4736 ; hsa-mir-3665 ; hsa-mir-383-3p ; hsa-mir-4717-5p ; hsa-mir-1295b-3p ; hsa-mir-1270 ; hsa-mir-1273e ; hsa-mir-3160-3p ; hsa-mir-3689d ; hsa-mir-4459 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4683 ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-5694 ; hsa-mir-6134 ; hsa-mir-620 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6840-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-3613-3p ; hsa-mir-3675-3p ; hsa-mir-4662a-5p ; hsa-mir-4676-5p ; hsa-mir-4684-5p ; hsa-mir-548c-3p ; hsa-mir-575 ; hsa-mir-6771-3p ; hsa-mir-6858-3p

Nearest miRNA

hsa-mir-10392/Upstream/1479498; hsa-let-7a-2/Downstream/1384974;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/121834, chr11-CpG: 35/Downstream/518075

Upstream sequence

ATAAACCACAGCTCTAAAATTTTAATGTAACTTAATGAAAACTAATTCAATTGAAGCGTGTTTCAGTTTGGTATTAGCTCTGAACCTGGGAAACTTGAGT

Downstream sequence

CCtggcattaggggaatctcttcattttatggaccctggtttcttcatctgtaaactcaggagattggaacagatgatctttaaggctcctttgaacctg

Target sequence

acgttctctgattcagtgctttcagaaactttgagaaaggtattatgactgtcaacattttacagatgataaaacagtagtattgagagattgataggtgacttgaccaaggtttctacatagaaaacaagtggctgaAGGGAAATGGTAATAATTTCTTTGACAAATAAAGCTTGCAAAATCAAAACAAAATACAAATGTTAGAGAAAAAAGATTACCAGGTAACCATGAAATTTATACCACTTAGAATTAAAA