Basic Information
VIS ID
TVIS10002175
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
116335823/115793202 (Hg38)
End
116335823/115793202 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/2911073; hsa-mir-1182/Downstream/766822;
Nearest TSS
ENST00000473358/Upstream/24421; ENST00000438885/Downstream/47539;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/150262, chr1-CpG: 78/Downstream/34987
Nearby gene
CASQ2(-24397) ; NHLH2(+43176) ;
Upstream sequence
TCCTCTAACGATGACTTTGGCACCAAGTACCCTAGGTCTGAAACACCGGTTTCTTATTAAGCAGCCCTGGCTTCAGAGGGTCTGTGAGTGAATAAGGACG
Downstream sequence
GATTGGGAGCCGTCCACTGGCCAGGTGTTTGGTAGCAGCTGCCACTTTCCTTCCTTTGTTTTCTCTACCATCACTGGTTTTAACCCTCATCTAGAAGGCC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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