Basic Information
VIS ID
TVIS10002176
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
237981113/237072470 (Hg38)
End
237981113/237072470 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/4521897; hsa-mir-149/Downstream/438461;
Nearest TSS
ENST00000437798/Upstream/16303; ENST00000419015/Downstream/12842;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/503850, chr2-CpG: 62/Downstream/13244
Nearby gene
ACKR3(-490119) ; COPS8(+12971) ;
Upstream sequence
CTCCCCGAAAGCACACTTAAAGGGACTGCCACTTAAAAAGTAATTTTTGGGGAAAGAAAAAATAAAGAGAGGAGGAAAAGTTAGGCCCAACCCAAGGCCT
Downstream sequence
GTCCGCTTTCCCTCAGCCAGTGGGAAATTAAGGATCCTGCATGGTGCCACAGCGCCCCCTGGTGGGAAAGACTGAGATTGCACTGAAGATCTCCAGACAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate