VISDB Viral Integration Site DataBase

VIS ID

TVIS10002217

Fusion event

HBV-IPCEF1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr6

Cytoband

q25.2

Reference genome

Start

End

154619560/154298426 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-let-7b-5p ; hsa-mir-521 ; hsa-mir-5006-3p ; hsa-mir-3620-5p ; hsa-mir-4755-5p ; hsa-mir-1587 ; hsa-mir-4674 ; hsa-mir-623 ; hsa-mir-664b-5p ; hsa-mir-8064 ; hsa-mir-6832-3p ; hsa-mir-216b-3p ; hsa-mir-5582-5p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-676-5p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6753-5p ; hsa-mir-34b-3p

Nearest miRNA

hsa-mir-10398/Upstream/3195650; hsa-mir-1202/Downstream/554934;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/258553, chr6-CpG: 141/Downstream/211000

Upstream sequence

TAATGTCTGATTTCTTTCTCTTAATATTTGTGTCCTCATGGTGACTTATTTGAGATACATTGCTATGTGAGTCTGAGCAAATATTTTGGGTACTTAGCCA

Downstream sequence

TAAGTCAGCAGTTTCACTTTGACTTTGCAAACATTTCATGAGTCATAGTCAATTATATAATCTCGAATCAAGAGGGCATTGTTATTTGTTCATTGAAGAA